PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008242372.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family HSF
Protein Properties Length: 485aa    MW: 53440.9 Da    PI: 4.8038
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008242372.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind108.64.5e-341462362101
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k+++ ++d+e+++++sws++g+sf+v+d+ ef++++LpkyFkh+nf+SF+RQLn+YgFkkv+ ++         weF++  F+ gkk+ll++
  XP_008242372.1 146 FLNKTFQAVDDPETNSVVSWSASGQSFIVWDSYEFSRTLLPKYFKHNNFSSFIRQLNTYGFKKVDPDR---------WEFANGGFQGGKKHLLKN 231
                     9****************************************************************999.........****************** PP

                     XXXXX CS
    HSF_DNA-bind  97 ikrkk 101
                     ikr+ 
  XP_008242372.1 232 IKRRI 236
                     ***96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.2E-36142235IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.9E-33142235IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.6E-58142235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-19146169IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.1E-30146235IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-19184196IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340185209IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000564.6E-19197209IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 485 aa     Download sequence    Send to blast
MVVPEGGGGC GGGDGGGGGI SRLPLSSATQ SPKPSNGLEE AENELNKATE EVAPAKEEQK  60
AVTFKGGNCD RSSSSSSSPA LPKPAKEMFC IKEENIDVVV VDDDVDVDGG DDGNFNGGDG  120
GTFSSSSSMA LPKPMDGLHE AGPPPFLNKT FQAVDDPETN SVVSWSASGQ SFIVWDSYEF  180
SRTLLPKYFK HNNFSSFIRQ LNTYGFKKVD PDRWEFANGG FQGGKKHLLK NIKRRIRYNK  240
QPTVGCVDST KTGLEAEIES LKKDQDFLKL EIMNLRQQQK YSQHQLTAIE QRIRNSECKN  300
QRMLFFLTKT ATNSTIVQQL MQKRVIKREL DGSDLRKRRR MPSVQVLESL RDGIDTSLSV  360
DCGTQLEEEL VPMQSLLAEQ VAEAKVAKQN EGPLPAPMID KSGNAVQDLK PHVMARTGTE  420
DMPTAYHGMS ENFLEENVVF DDDEFEVGYS NFYQELEDLI GKPHDWSGYV SHCLMEQAGV  480
IGAMP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-2414123612121Heat shock factor protein 1
5d5u_B1e-2414123621130Heat shock factor protein 1
5d5v_B1e-2414123621130Heat shock factor protein 1
5d5v_D1e-2414123621130Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228234LKNIKRR
2335339RKRRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242372.10.0PREDICTED: heat stress transcription factor A-2-like
TrEMBLM5VVF50.0M5VVF5_PRUPE; Uncharacterized protein
STRINGPOPTR_0006s15050.11e-123(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106762938
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.11e-79heat shock transcription factor A2